Hoffman, E., Turner, K., Fernandez, J., Wilson, S., Rihel, J., State, M., and Giraldez, A. (2015) Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2, Neuropsychopharmacol 40, S356-S356.

Jungke, P., Hans, S., Gupta, M., Machate, A., Zoller, D., and Brand, M. (2016) Generation of a conditional lima1a allele in zebrafish using the FLEx switch technology, Genesis 54, 19-28.

Zizioli, D., Tiso, N., Guglielmi, A., Saraceno, C., Busolin, G., Giuliani, R., Khatri, D., Monti, E., Borsani, G., Argenton, F., and Finazzi, D. (2016) Knock-down of pantothenate kinase 2 severely affects the development of the nervous and vascular system in zebrafish, providing new insights into PKAN disease, Neurobiol Dis 85, 35-48.o


Affaticati, P., Yamamoto, K., Rizzi, B., Bureau, C., Peyrieras, N., Pasqualini, C., Demarque, M., and Vernier, P. (2015) Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain, Sci Rep-Uk 5.

Astone, M., Pizzi, M., Peron, M., Domenichini, A., Guzzardo, V., Tochterle, S., Tiso, N., Rugge, M., Meyer, D., Argenton, F., and Vettori, A. (2015) A GFP-Tagged Gross Deletion on Chromosome 1 Causes Malignant Peripheral Nerve Sheath Tumors and Carcinomas in Zebrafish, PLoS One 10, e0145178.

Beyer, H. M., Juillot, S., Herbst, K., Samodelov, S. L., Muller, K., Schamel, W. W., Romer, W., Schafer, E., Nagy, F., Strahle, U., Weber, W., and Zurbriggen, M. D. (2015) Red Light-Regulated Reversible Nuclear Localization of Proteins in Mammalian Cells and Zebrafish, ACS Synth Biol.

Collins, J. E., Wali, N., Sealy, I. M., Morris, J. A., White, R. J., Leonard, S. R., Jackson, D. K., Jones, M. C., Smerdon, N. C., Zamora, J., Dooley, C. M., Carruthers, S. N., Barrett, J. C., Stemple, D. L., and Busch-Nentwich, E. M. (2015) High-throughput and quantitative genome-wide messenger RNA sequencing for molecular phenotyping, BMC Genomics 16, 578.

Diotel, N., Beil, T., Strahle, U., and Rastegar, S. (2015) Differential expression of id genes and their potential regulator znf238 in zebrafish adult neural progenitor cells and neurons suggests distinct functions in adult neurogenesis, Gene Expr Patterns.

Diotel, N., Viales, R. R., Armant, O., Marz, M., Ferg, M., Rastegar, S., and Strahle, U. (2015) Comprehensive Expression Map of Transcription Regulators in the Adult Zebrafish Telencephalon Reveals Distinct Neurogenic Niches, J Comp Neurol 523, 1202-1221.

Elks, P. M., Renshaw, S. A., Meijer, A. H., Walmsley, S. R., and van Eeden, F. J. (2015) Exploring the HIFs, buts and maybes of hypoxia signalling in disease: lessons from zebrafish models, Dis Model Mech 8, 1349-1360.

Ernest, S., and Rosa, F. M. (2015) A genomic region encompassing a newly identified exon provides enhancing activity sufficient for normal myo7aa expression in zebrafish sensory hair cells, Dev Neurobiol 75, 961-983.

Etard, C., Armant, O., Roostalu, U., Gourain, V., Ferg, M., and Strahle, U. (2015) Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells, Genome Biol 16, 267.

Fontaine, R., Affaticati, P., Bureau, C., Colin, I., Demarque, M., Dufour, S., Vernier, P., Yamamoto, K., and Pasqualini, C. (2015) Dopaminergic Neurons Controlling Anterior Pituitary Functions: Anatomy and Ontogenesis in Zebrafish, Endocrinology 156, 2934-2948.

Gao, X., Metzger, U., Panza, P., Mahalwar, P., Alsheimer, S., Geiger, H., Maischein, H. M., Levesque, M. P., Templin, M., and Sollner, C. (2015) A Floor-Plate Extracellular Protein-Protein Interaction Screen Identifies Draxin as a Secreted Netrin-1 Antagonist, Cell Rep 12, 694-708.

Haberle, V., Forrest, A. R., Hayashizaki, Y., Carninci, P., and Lenhard, B. (2015) CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses, Nucleic Acids Res 43, e51.

Hen, G., Nicenboim, J., Mayseless, O., Asaf, L., Shin, M., Busolin, G., Hofi, R., Almog, G., Tiso, N., Lawson, N. D., and Yaniv, K. (2015) Venous-derived angioblasts generate organ-specific vessels during zebrafish embryonic development, Development 142, 4266-4278.

Hernandez-Bejarano, M., Gestri, G., Spawls, L., Nieto-Lopez, F., Picker, A., Tada, M., Brand, M., Bovolenta, P., Wilson, S. W., and Cavodeassi, F. (2015) Opposing Shh and Fgf signals initiate nasotemporal patterning of the zebrafish retina, Development 142, 3933-3942.

Hu, Z., Holzschuh, J., and Driever, W. (2015) Loss of DDB1 Leads to Transcriptional p53 Pathway Activation in Proliferating Cells, Cell Cycle Deregulation, and Apoptosis in Zebrafish Embryos, PLoS One 10, e0134299.

Jungke, P., Hammer, J., Hans, S., and Brand, M. (2015) Isolation of Novel CreERT2-Driver Lines in Zebrafish Using an Unbiased Gene Trap Approach, PLoS One 10, e0129072.

Kizil, C., Iltzsche, A., Thomas, A. K., Bhattarai, P., Zhang, Y. X., and Brand, M. (2015) Efficient Cargo Delivery into Adult Brain Tissue Using Short Cell-Penetrating Peptides, PLoS One 10.

Kizil, C., Kyritsis, N., and Brand, M. (2015) Effects of inflammation on stem cells: together they strive?, Embo Rep 16, 416-426.

Kobitski, A. Y., Otte, J. C., Takamiya, M., Schafer, B., Mertes, J., Stegmaier, J., Rastegar, S., Rindone, F., Hartmann, V., Stotzka, R., Garcia, A., van Wezel, J., Mikut, R., Strahle, U., and Nienhaus, G. U. (2015) An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution, Sci Rep-Uk 5.

Leibold, S., and Hammerschmidt, M. (2015) Long-Term Hyperphagia and Caloric Restriction Caused by Low- or High-Density Husbandry Have Differential Effects on Zebrafish Postembryonic Development, Somatic Growth, Fat Accumulation and Reproduction, PLoS One 10.

Meijer, A. H. (2015) Protection and pathology in TB: learning from the zebrafish model, Semin Immunopathol.

Nepal, C., Coolen, M., Hadzhiev, Y., Cussigh, D., Mydel, P., Steen, V. M., Carninci, P., Andersen, J. B., Bally-Cuif, L., Muller, F., and Lenhard, B. (2015) Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs, Nucleic Acids Res.

Novodvorsky, P., Watson, O., Gray, C., Wilkinson, R. N., Reeve, S., Smythe, C., Beniston, R., Plant, K., Maguire, R., A, M. K. R., Elworthy, S., van Eeden, F. J., and Chico, T. J. (2015) klf2ash317 Mutant Zebrafish Do Not Recapitulate Morpholino-Induced Vascular and Haematopoietic Phenotypes, PLoS One 10, e0141611.

Ordas, A., Raterink, R. J., Cunningham, F., Jansen, H. J., Wiweger, M. I., Jong-Raadsen, S., Bos, S., Bates, R. H., Barros, D., Meijer, A. H., Vreeken, R. J., Ballell-Pages, L., Dirks, R. P., Hankemeier, T., and Spaink, H. P. (2015) Testing Tuberculosis Drug Efficacy in a Zebrafish High-Throughput Translational Medicine Screen, Antimicrob Agents Ch 59, 753-762.

Panza, P., Maier, J., Schmees, C., Rothbauer, U., and Sollner, C. (2015) Live imaging of endogenous protein dynamics in zebrafish using chromobodies, Development 142, 1879-1884.

Panza, P., Sitko, A. A., Maischein, H. M., Koch, I., Flotenmeyer, M., Wright, G. J., Mandai, K., Mason, C. A., and Sollner, C. (2015) The LRR receptor Islr2 is required for retinal axon routing at the vertebrate optic chiasm, Neural Dev 10, 23.

Rinkwitz, S., Geng, F. S., Manning, E., Suster, M., Kawakami, K., and Becker, T. S. (2015) BAC transgenic zebrafish reveal hypothalamic enhancer activity around obesity associated SNP rs9939609 within the human FTO gene, Genesis 53, 640-651.

Scheidecker, S., Etard, C., Haren, L., Stoetzel, C., Hull, S., Arno, G., Plagnol, V., Drunat, S., Passemard, S., Toutain, A., Obringer, C., Koob, M., Geoffroy, V., Marion, V., Strahle, U., Ostergaard, P.Verloes, A., Merdes, A., Moore, A. T., and Dollfus, H. (2015) Mutations in TUBGCP4 alter microtubule organization via the gamma-tubulin ring complex in autosomal-recessive microcephaly with chorioretinopathy, Am J Hum Genet 96, 666-674.

Takamiya, M., Weger, B. D., Schindler, S., Beil, T., Yang, L. X., Armant, O., Ferg, M., Schlunck, G., Reinhard, T., Dickmeis, T., Rastegar, S., and Strahle, U. (2015) Molecular Description of Eye Defects in the Zebrafish Pax6b Mutant, sunrise, Reveals a Pax6b-Dependent Genetic Network in the Developing Anterior Chamber, PLoS One 10.

Than-Trong, E., and Bally-Cuif, L. (2015) Radial glia and neural progenitors in the adult zebrafish central nervous system, Glia 63, 1406-1428.

Torraca, V., Cui, C., Boland, R., Bebelman, J. P., van der Sar, A. M., Smit, M. J., Siderius, M., Spaink, H. P., and Meijer, A. H. (2015) The CXCR3-CXCL11 signaling axis mediates macrophage recruitment and dissemination of mycobacterial infection, Dis Model Mech 8, 253-269.

Veneman, W., de Sonneville, J., van der Kolk, K. J., Ordas, A., Al-Ars, Z., Meijer, A., and Spaink, H. (2015) Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics, Immunogenetics 67, 135-147.

Viales, R. R., Diotel, N., Ferg, M., Armant, O., Eich, J., Alunni, A., Marz, M., Bally-Cuif, L., Rastegar, S., and Strahle, U. (2015) The Helix-Loop-Helix Protein Id1 Controls Stem Cell Proliferation During Regenerative Neurogenesis in the Adult Zebrafish Telencephalon, Stem Cells 33, 892-903.

Yamamoto, K., Fontaine, R., Pasqualini, C., and Vernier, P. (2015) Classification of Dopamine Receptor Genes in Vertebrates: Nine Subtypes in Osteichthyes, Brain Behav Evol 86, 164-175.

Zang, J., Keim, J., Kastenhuber, E., Gesemann, M., and Neuhauss, S. C. (2015) Recoverin depletion accelerates cone photoresponse recovery, Open Biol 5.


Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Bornholdt, J., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O., Jorgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., Muller, F., Forrest, A. R., Carninci, P., Rehli, M., and Sandelin, A. (2014) An atlas of active enhancers across human cell types and tissues, Nature 507, 455-461.

Benato, F., Colletti, E., Skobo, T., Moro, E., Colombo, L., Argenton, F., and Dalla Valle, L. (2014) A living biosensor model to dynamically trace glucocorticoid transcriptional activity during development and adult life in zebrafish, Mol Cell Endocrinol 392, 60-72.

Bluhm, K., Otte, J. C., Yang, L. X., Zinsmeister, C., Legradi, J., Keiter, S., Kosmehl, T., Braunbeck, T., Strahle, U., and Hollert, H. (2014) Impacts of Different Exposure Scenarios on Transcript Abundances in Danio rerio Embryos when Investigating the Toxicological Burden of Riverine Sediments, PLoS One 9.

Casari, A., Schiavone, M., Facchinello, N., Vettori, A., Meyer, D., Tiso, N., Moro, E., and Argenton, F. (2014) A Smad3 transgenic reporter reveals TGF-beta control of zebrafish spinal cord development, Dev Biol 396, 81-93.

Castro-Gonzalez, C., Luengo-Oroz, M. A., Duloquin, L., Savy, T., Rizzi, B., Desnoulez, S., Doursat, R., Kergosien, Y. L., Ledesma-Carbayo, M. J., Bourgine, P., Peyrieras, N., and Santos, A. (2014) A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis, PLoS Comput Biol 10, e1003670.

Dirian, L., Galant, S., Coolen, M., Chen, W., Bedu, S., Houart, C., Bally-Cuif, L., and Foucher, I. (2014) Spatial regionalization and heterochrony in the formation of adult pallial neural stem cells, Dev Cell 30, 123-136.

Elks, P. M., van der Vaart, M., van Hensbergen, V., Schutz, E., Redd, M. J., Murayama, E., Spaink, H. P., and Meijer, A. H. (2014) Mycobacteria counteract a TLR-mediated nitrosative defense mechanism in a zebrafish infection model, PLoS One 9, e100928.

Ferg, M., Armant, O., Yang, L. X., Dickmeis, T., Rastegar, S., and Strahle, U. (2014) Gene transcription in the zebrafish embryo: regulators and networks, Brief Funct Genomics 13, 131-143.

Ferg, M., Rastegar, S., Strähle, U. (2014) Der Zebrabärbling als Modell für die Regeneration von Nervengewebe, BioSpektrum Vol. 20/Issue 2, 148-150.

Filippi, A., Mueller, T., and Driever, W. (2014) vglut2 and gad Expression Reveal Distinct Patterns of Dual GABAergic Versus Glutamatergic Cotransmitter Phenotypes of Dopaminergic and Noradrenergic Neurons in the Zebrafish Brain, J Comp Neurol 522, 2019-2037.

Fischer, B., Metzger, M., Richardson, R., Knyphausen, P., Ramezani, T., Franzen, R., Schmelzer, E., Bloch, W., Carney, T. J., and Hammerschmidt, M. (2014) p53 and TAp63 promote keratinocyte proliferation and differentiation in breeding tubercles of the zebrafish, PLoS Genet 10, e1004048.

Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X. J., Akalin, A., Suzuki, A. M., van IJcken, W. F. J., Armant, O., Ferg, M., Strahle, U., Carninci, P., Muller, F., and Lenhard, B. (2014) Two independent transcription initiation codes overlap on vertebrate core promoters, Nature 507, 381-385.

Hosseini, R., Lamers, G. E. M., Hodzic, Z., Meijer, A. H., Schaaf, M. J. M., and Spaink, H. P. (2014) Correlative light and electron microscopy imaging of autophagy in a zebrafish infection model, Autophagy 10, 1844-1857.

Huber-Reggi, S. P., Mueller, K. P., Straumann, D., Huang, M. Y. Y., and Neuhauss, S. C. F. (2014) Individual Larvae of the Zebrafish Mutant belladonna Display Multiple Infantile Nystagmus-Like Waveforms that Are Influenced by Viewing Conditions, Invest Ophth Vis Sci 55, 3971-3978.

Kizil, C., Kuchler, B., Yan, J. J., Ozhan, G., Moro, E., Argenton, F., Brand, M., Weidinger, G., and Antos, C. L. (2014) Simplet/Fam53b is required for Wnt signal transduction by regulating beta-catenin nuclear localization, Development 141, 3529-3539.

Koch, P., Lohr, H. B., and Driever, W. (2014) A Mutation in cnot8, Component of the Ccr4-Not Complex Regulating Transcript Stability, Affects Expression Levels of Developmental Regulators and Reveals a Role of Fgf3 in Development of Caudal Hypothalamic Dopaminergic Neurons, PLoS One 9.

Kyritsis, N., Kizil, C., and Brand, M. (2014) Neuroinflammation and central nervous system regeneration in vertebrates, Trends Cell Biol 24, 128-135.

Lahiri, K., Froehlich, N., Heyd, A., Foulkes, N. S., and Vallone, D. (2014) Developmental stage-specific regulation of the circadian clock by temperature in zebrafish, Biomed Res Int 2014, 930308.

Manoli, M., and Driever, W. (2014) nkx2.1 and nkx2.4 genes function partially redundant during development of the zebrafish hypothalamus, preoptic region, and pallidum, Front Neuroanat 8.

Muller, F., and Tora, L. (2014) Chromatin and DNA sequences in defining promoters for transcription initiation, Bba-Gene Regul Mech 1839, 118-128.

Richardson, R. J., Gebauer, J. M., Zhang, J. L., Kobbe, B., Keene, D. R., Karlsen, K. R., Richetti, S., Wohl, A. P., Sengle, G., Neiss, W. F., Paulsson, M., Hammerschmidt, M., and Wagener, R. (2014) AMACO Is a Component of the Basement Membrane-Associated Fraser Complex, J Invest Dermatol 134, 1313-1322.

Roberts, J. A., Miguel-Escalada, I., Slovik, K. J., Walsh, K. T., Hadzhiev, Y., Sanges, R., Stupka, E., Marsh, E. K., Balciuniene, J., Balciunas, D., and Muller, F. (2014) Targeted transgene integration overcomes variability of position effects in zebrafish, Development 141, 715-724.

Scheidecker, S., Etard, C., Pierce, N. W., Geoffroy, V., Schaefer, E., Muller, J., Chennen, K., Flori, E., Pelletier, V., Poch, O., Marion, V., Stoetzel, C., Strahle, U., Nachury, M. V., and Dollfus, H. (2014) Exome sequencing of Bardet-Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18), J Med Genet 51, 132-136.

Schiavone, M., Rampazzo, E., Casari, A., Battilana, G., Persano, L., Moro, E., Liu, S., Leach, S. D., Tiso, N., and Argenton, F. (2014) Zebrafish reporter lines reveal in vivo signaling pathway activities involved in pancreatic cancer, Dis Model Mech 7, 883-894.

Schmidt, R., Beil, T., Strahle, U., and Rastegar, S. (2014) Stab wound injury of the zebrafish adult telencephalon: a method to investigate vertebrate brain neurogenesis and regeneration, J Vis Exp, e51753.

Stegmaier, J., Otte, J. C., Kobitski, A., Bartschat, A., Garcia, A., Nienhaus, G. U., Strahle, U., and Mikut, R. (2014) Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks, PLoS One 9, e90036.

Stegmaier, J., Shahid, M., Takamiya, M., Yang, L. X., Rastegar, S., Reischl, M., Strahle, U., and Mikut, R. (2014) Automated prior knowledge-based quantification of neuronal patterns in the spinal cord of zebrafish, Bioinformatics 30, 726-733.

Torraca, V., Masud, S., Spaink, H. P., and Meijer, A. H. (2014) Macrophage-pathogen interactions in infectious diseases: new therapeutic insights from the zebrafish host model, Dis Model Mech 7, 785-797.

van der Vaart, M., Korbee, C. J., Lamers, G. E. M., Tengeler, A. C., Hosseini, R., Haks, M. C., Ottenhoff, T. H. M., Spaink, H. P., and Meijer, A. H. (2014) The DNA Damage-Regulated Autophagy Modulator DRAM1 Links Mycobacterial Recognition via TLR-MYD88 to Autophagic Defense (vol 15, pg 753, 2014), Cell Host Microbe 16, 141-141.

Veneman, W. J., Marin-Juez, R., de Sonneville, J., Ordas, A., Jong-Raadsen, S., Meijer, A. H., and Spaink, H. P. (2014) Establishment and optimization of a high throughput setup to study Staphylococcus epidermidis and Mycobacterium marinum infection as a model for drug discovery, J Vis Exp, e51649.

Wehner, D., Cizelsky, W., Vasudevaro, M. D., Ozhan, G., Haase, C., Kagermeier-Schenk, B., Roder, A., Dorsky, R. I., Moro, E., Argenton, F., Kuhl, M., and Weidinger, G. (2014) Wnt/beta-Catenin Signaling Defines Organizing Centers that Orchestrate Growth and Differentiation of the Regenerating Zebrafish Caudal Fin, Cell Rep 6, 467-481.


Alunni, A., Krecsmarik, M., Bosco, A., Galant, S., Pan, L., Moens, C. B., and Bally-Cuif, L. (2013) Notch3 signaling gates cell cycle entry and limits neural stem cell amplification in the adult pallium, Development 140, 3335-3347.

Armant, O., Marz, M., Schmidt, R., Ferg, M., Diotel, N., Ertzer, R., Bryne, J. C., Yang, L. X., Baader, I., Reischl, M., Legradi, J., Mikut, R., Stemple, D., van Ijcken, W., van der Sloot, A., Lenhard, B., Strahle, U., and Rastegar, S. (2013) Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos, Dev Biol 380, 351-362.

Bakos, K., Kovacs, R., Staszny, A., Sipos, D. K., Urbanyia, B., Muller, F., Csenki, Z., and Kovacs, B. (2013) Developmental toxicity and estrogenic potency of zearalenone in zebrafish (Danio rerio), Aquat Toxicol 136, 13-21.

Boyer, B., Ernest, S., and Rosa, F. (2013) Egr-1 induction provides a genetic response to food aversion in zebrafish, Front Behav Neurosci 7, 51.

de Oliveira-Carlos, V., Ganz, J., Hans, S., Kaslin, J., and Brand, M. (2013) Notch Receptor Expression in Neurogenic Regions of the Adult Zebrafish Brain, PLoS One 8.

Dhillon, P. (2013) Building bridges with zebrafish: highlights of the 'Zebrafish Models in Translational Medicine' meeting, Dis Model Mech 6, 1301-1302.

Dooley, C. M., Schwarz, H., Mueller, K. P., Mongera, A., Konantz, M., Neuhauss, S. C., Nusslein-Volhard, C., and Geisler, R. (2013) Slc45a2 and V-ATPase are regulators of melanosomal pH homeostasis in zebrafish, providing a mechanism for human pigment evolution and disease, Pigment Cell Melanoma Res 26, 205-217.

Elks, P. M., Brizee, S., van der Vaart, M., Walmsley, S. R., van Eeden, F. J., Renshaw, S. A., and Meijer, A. H. (2013) Hypoxia inducible factor signaling modulates susceptibility to mycobacterial infection via a nitric oxide dependent mechanism, PLoS Pathog 9, e1003789.

Fernandes, A. M., Beddows, E., Filippi, A., and Driever, W. (2013) Orthopedia transcription factor otpa and otpb paralogous genes function during dopaminergic and neuroendocrine cell specification in larval zebrafish, PLoS One 8, e75002.

Fernandes, A. M., Fero, K., Driever, W., and Burgess, H. A. (2013) Enlightening the brain: Linking deep brain photoreception with behavior and physiology, Bioessays 35, 775-779.

Feula, A., Dhillon, S. S., Byravan, R., Sangha, M., Ebanks, R., Salih, M. A., Spencer, N., Male, L., Magyary, I., Deng, W. P., Muller, F., and Fossey, J. S. (2013) Synthesis of azetidines and pyrrolidines via iodocyclisation of homoallyl amines and exploration of activity in a zebrafish embryo assay, Org Biomol Chem 11, 5083-5093.

Fontaine, R., Affaticati, P., Yamamoto, K., Jolly, C., Bureau, C., Baloche, S., Gonnet, F., Vernier, P., Dufour, S., and Pasqualini, C. (2013) Dopamine inhibits reproduction in female zebrafish (Danio rerio) via three pituitary D2 receptor subtypes, Endocrinology 154, 807-818.

Grandel, H., and Brand, M. (2013) Comparative aspects of adult neural stem cell activity in vertebrates, Dev Genes Evol 223, 131-147.

Gupta, M., and Brand, M. (2013) Identification and Expression Analysis of Zebrafish Glypicans during Embryonic Development, PLoS One 8.

Hans, S., Irmscher, A., and Brand, M. (2013) Zebrafish Foxi1 provides a neuronal ground state during inner ear induction preceding the Dlx3b/4b-regulated sensory lineage, Development 140, 1936-1945.

Haug, M. F., Gesemann, M., Mueller, T., and Neuhauss, S. C. (2013) Phylogeny and expression divergence of metabotropic glutamate receptor genes in the brain of zebrafish (Danio rerio), J Comp Neurol 521, 1533-1560.

Ho, N. Y., Yang, L., Legradi, J., Armant, O., Takamiya, M., Rastegar, S., and Strahle, U. (2013) Gene responses in the central nervous system of zebrafish embryos exposed to the neurotoxicant methyl mercury, Environ Sci Technol 47, 3316-3325.

Ishibashi, M., Mechaly, A. S., Becker, T. S., and Rinkwitz, S. (2013) Using zebrafish transgenesis to test human genomic sequences for specific enhancer activity, Methods 62, 216-225.

Jungke, P., Hans, S., and Brand, M. (2013) The Zebrafish CreZoo: An Easy-to-Handle Database for Novel CreER(T2)-Driver Lines, Zebrafish 10, 259-263.

Kaslin, J., Kroehne, V., Benato, F., Argenton, F., and Brand, M. (2013) Development and specification of cerebellar stem and progenitor cells in zebrafish: from embryo to adult, Neural Development 8.

Kettleborough, R. N., Busch-Nentwich, E. M., Harvey, S. A., Dooley, C. M., de Bruijn, E., van Eeden, F., Sealy, I., White, R. J., Herd, C., Nijman, I. J., Fenyes, F., Mehroke, S., Scahill, C., Gibbons, R., Wali, N., Carruthers, S., Hall, A., Yen, J., Cuppen, E., and Stemple, D. L. (2013) A systematic genome-wide analysis of zebrafish protein-coding gene function, Nature 496, 494-497.

Kizil, C., Iltzsche, A., Kaslin, J., and Brand, M. (2013) Micromanipulation of Gene Expression in the Adult Zebrafish Brain Using Cerebroventricular Microinjection of Morpholino Oligonucleotides, Jove-J Vis Exp.

Lange, M., Neuzeret, F., Fabreges, B., Froc, C., Bedu, S., Bally-Cuif, L., and Norton, W. H. J. (2013) Inter-Individual and Inter-Strain Variations in Zebrafish Locomotor Ontogeny, PLoS One 8.

Mikut, R., Dickmeis, T., Driever, W., Geurts, P., Hamprecht, F. A., Kausler, B. X., Ledesma-Carbayo, M. J., Maree, R., Mikula, K., Pantazis, P., Ronneberger, O., Santos, A., Stotzka, R., Strahle, U., and Peyrieras, N. (2013) Automated Processing of Zebrafish Imaging Data: A Survey, Zebrafish 10, 401-421.

Miyares, R. L., Stein, C., Renisch, B., Anderson, J. L., Hammerschmidt, M., and Farber, S. A. (2013) Long-chain Acyl-CoA synthetase 4A regulates Smad activity and dorsoventral patterning in the zebrafish embryo, Dev Cell 27, 635-647.

Moro, E., Vettori, A., Porazzi, P., Schiavone, M., Rampazzo, E., Casari, A., Ek, O., Facchinello, N., Astone, M., Zancan, I., Milanetto, M., Tiso, N., and Argenton, F. (2013) Generation and application of signaling pathway reporter lines in zebrafish, Mol Genet Genomics 288, 231-242.

Nepal, C., Hadzhiev, Y., Previti, C., Haberle, V., Li, N., Takahashi, H., Suzuki, A. M. M., Sheng, Y., Abdelhamid, R. F., Anand, S., Gehrig, J., Akalin, A., Kockx, C. E. M., van der Sloot, A. A. J., van IJcken, W. F. J., Armant, O., Rastegar, S., Watson, C., Strahle, U., Stupka, E., Carninci, P., Lenhard, B., and Muller, F. (2013) Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis, Genome Res 23, 1938-1950.

Palmblad, M., Henkel, C. V., Dirks, R. P., Meijer, A. H., Deelder, A. M., and Spaink, H. P. (2013) Parallel deep transcriptome and proteome analysis of zebrafish larvae, BMC Res Notes 6, 428.

Parajes, S., Griffin, A., Taylor, A. E., Rose, I. T., Miguel-Escalada, I., Hadzhiev, Y., Arlt, W., Shackleton, C., Muller, F., and Krone, N. (2013) Redefining the Initiation and Maintenance of Zebrafish Interrenal Steroidogenesis by Characterizing the Key Enzyme Cyp11a2, Endocrinology 154, 2702-2711.

Rampazzo, E., Persano, L., Pistollato, F., Moro, E., Frasson, C., Porazzi, P., Della Puppa, A., Bresolin, S., Battilana, G., Indraccolo, S., Te Kronnie, G., Argenton, F., Tiso, N., and Basso, G. (2013) Wnt activation promotes neuronal differentiation of glioblastoma, Cell Death Dis 4, e500.

Raterink, R. J., van der Kloet, F. M., Li, J. J., Wattel, N. A., Schaaf, M. J. M., Spaink, H. P., Berger, R., Vreeken, R. J., and Hankemeier, T. (2013) Rapid metabolic screening of early zebrafish embryogenesis based on direct infusion-nanoESI-FTMS, Metabolomics 9, 864-873.

Recher, G., Jouralet, J., Brombin, A., Heuze, A., Mugniery, E., Hermel, J. M., Desnoulez, S., Savy, T., Herbomel, P., Bourrat, F., Peyrieras, N., Jamen, F., and Joly, J. S. (2013) Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis, Development 140, 4860-4869.

Rian, H., Krens, S. F. G., Spaink, H. P., and Snaar-Jagalska, E. B. (2013) Generation of Constitutive Active ERK Mutants as Tools for Cancer Research in Zebrafish, ISRN Cell Biology, Hindawi Publishing Corporation Volume 2013, Article ID 867613, 11 pages.

Richardson, R., Slanchev, K., Kraus, C., Knyphausen, P., Eming, S., and Hammerschmidt, M. (2013) Adult Zebrafish as a Model System for Cutaneous Wound-Healing Research, J Invest Dermatol 133, 1655-1665.

Sanges, R., Hadzhiev, Y., Gueroult-Bellone, M., Roure, A., Ferg, M., Meola, N., Amore, G., Basu, S., Brown, E. R., De Simone, M., Petrera, F., Licastro, D., Strahle, U., Banfi, S., Lemaire, P., Birney, E., Muller, F., and Stupka, E. (2013) Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development, Nucleic Acids Res 41, 3600-3618.

Schmidt, R., Strahle, U., and Scholpp, S. (2013) Neurogenesis in zebrafish - from embryo to adult, Neural Development 8.

Spaink, H. P., Cui, C., Wiweger, M. I., Jansen, H. J., Veneman, W. J., Marin-Juez, R., de Sonneville, J., Ordas, A., Torraca, V., van der Ent, W., Leenders, W. P., Meijer, A. H., Snaar-Jagalska, B. E., and Dirks, R. P. (2013) Robotic injection of zebrafish embryos for high-throughput screening in disease models, Methods 62, 246-254.

Sugano, Y., and Neuhauss, S. C. F. (2013) Reverse genetics tools in zebrafish: A forward dive into endocrinology, Gen Comp Endocr 188, 303-308.

Tixier, V., Bataille, L., Etard, C., Jagla, T., Weger, M., DaPonte, J. P., Strahle, U., Dickmeis, T., and Jagla, K. (2013) Glycolysis supports embryonic muscle growth by promoting myoblast fusion, P Natl Acad Sci USA 110, 18982-18987.

van der Vaart, M., van Soest, J. J., Spaink, H. P., and Meijer, A. H. (2013) Functional analysis of a zebrafish myd88 mutant identifies key transcriptional components of the innate immune system, Dis Model Mech 6, 841-854.

Veneman, W. J., Stockhammer, O. W., de Boer, L., Zaat, S. A. J., Meijer, A. H., and Spaink, H. P. (2013) A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery, BMC Genomics 14.

Watson, O., Novodvorsky, P., Gray, C., Rothman, A. M., Lawrie, A., Crossman, D. C., Haase, A., McMahon, K., Gering, M., Van Eeden, F. J., and Chico, T. J. (2013) Blood flow suppresses vascular Notch signalling via dll4 and is required for angiogenesis in response to hypoxic signalling, Cardiovasc Res 100, 252-261.

Weber, A., Hochmann, S., Cimalla, P., Gartner, M., Kuscha, V., Hans, S., Geffarth, M., Kaslin, J., Koch, E., and Brand, M. (2013) Characterization of light lesion paradigms and optical coherence tomography as tools to study adult retina regeneration in zebrafish, PLoS One 8, e80483.

Weger, M., Weger, B. D., Diotel, N., Rastegar, S., Hirota, T., Kay, S. A., Strahle, U., and Dickmeis, T. (2013) Real-time in vivo monitoring of circadian E-box enhancer activity: A robust and sensitive zebrafish reporter line for developmental, chemical and neural biology of the circadian clock, Dev Biol 380, 259-273.

Wilkinson, R. N., Elworthy, S., Ingham, P. W., and van Eeden, F. J. (2013) A method for high-throughput PCR-based genotyping of larval zebrafish tail biopsies, Biotechniques 55, 314-316.

Yamamoto, K., Mirabeau, O., Bureau, C., Blin, M., Michon-Coudouel, S., Demarque, M., and Vernier, P. (2013) Evolution of dopamine receptor genes of the D1 class in vertebrates, Mol Biol Evol 30, 833-843.

Zhao, J., Lambert, G., Meijer, A. H., and Rosa, F. M. (2013) The transcription factor Vox represses endoderm development by interacting with Casanova and Pou2, Development 140, 1090-1099.o


Artuso, L., Romano, A., Verri, T., Domenichini, A., Argenton, F., Santorelli, F. M., and Petruzzella, V. (2012) Mitochondrial DNA metabolism in early development of zebrafish (Danio rerio), Bba-Bioenergetics 1817, 1002-1011.

Becker, T. S., and Rinkwitz, S. (2012) Zebrafish as a genomics model for human neurological and polygenic disorders, Developmental Neurobiology 72, 415-428.

Benard, E. L., van der Sar, A. M., Ellett, F., Lieschke, G. J., Spaink, H. P., and Meijer, A. H. (2012) Infection of Zebrafish Embryos with Intracellular Bacterial Pathogens, Jove-J Vis Exp.

Bielen, H., and Houart, C. (2012) BMP Signaling Protects Telencephalic Fate by Repressing Eye Identity and Its Cxcr4-Dependent Morphogenesis, Developmental Cell 23, 812-822.

Coolen, M., Thieffry, D., Drivenes, O., Becker, T. S., and Bally-Cuif, L. (2012) miR-9 Controls the Timing of Neurogenesis through the Direct Inhibition of Antagonistic Factors, Developmental Cell 22, 1052-1064.

Feitosa, N. M., Zhang, J. L., Carney, T. J., Metzger, M., Korzh, V., Bloch, W., and Hammerschmidt, M. (2012) Hemicentin 2 and Fibulin 1 are required for epidermal-dermal junction formation and fin mesenchymal cell migration during zebrafish development, Dev Biol 369, 235-248.

Filippi, A., Jainok, C., and Driever, W. (2012) Analysis of transcriptional codes for zebrafish dopaminergic neurons reveals essential functions of Arx and Isl1 in prethalamic dopaminergic neuron development, Dev Biol 369, 133-149.

Ganz, J., Kaslin, J., Freudenreich, D., Machate, A., Geffarth, M., and Brand, M. (2012) Subdivisions of the adult zebrafish subpallium by molecular marker analysis, J Comp Neurol 520, 633-655.

Gestri, G., Link, B. A., and Neuhauss, S. C. F. (2012) The visual system of zebrafish and its use to model human ocular Diseases, Developmental Neurobiology 72, 302-327.

Hochmann, S., Kaslin, J., Hans, S., Weber, A., Machate, A., Geffarth, M., Funk, R. H. W., and Brand, M. (2012) Fgf Signaling is Required for Photoreceptor Maintenance in the Adult Zebrafish Retina, PLoS One 7.

Huang, Y. Y., Haug, M. F., Gesemann, M., and Neuhauss, S. C. F. (2012) Novel Expression Patterns of Metabotropic Glutamate Receptor 6 in the Zebrafish Nervous System, PLoS One 7.

Kizil, C., Dudczig, S., Kyritsis, N., Machate, A., Blaesche, J., Kroehne, V., and Brand, M. (2012) The chemokine receptor cxcr5 regulates the regenerative neurogenesis response in the adult zebrafish brain, Neural Dev 7, 27.

Kizil, C., Kaslin, J., Kroehne, V., and Brand, M. (2012) Adult neurogenesis and brain regeneration in zebrafish, Developmental Neurobiology 72, 429-461.

Kizil, C., Kyritsis, N., Dudczig, S., Kroehne, V., Freudenreich, D., Kaslin, J., and Brand, M. (2012) Regenerative Neurogenesis from Neural Progenitor Cells Requires Injury-Induced Expression of Gata3, Developmental Cell 23, 1230-1237.

Kyritsis, N., Kizil, C., Zocher, S., Kroehne, V., Kaslin, J., Freudenreich, D., Iltzsche, A., and Brand, M. (2012) Acute Inflammation Initiates the Regenerative Response in the Adult Zebrafish Brain, Science 338, 1353-1356.

Lange, M., Norton, W., Coolen, M., Chaminade, M., Merker, S., Proft, F., Schmitt, A., Vernier, P., Lesch, K. P., and Bally-Cuif, L. (2012) The ADHD-susceptibility gene lphn3.1 modulates dopaminergic neuron formation and locomotor activity during zebrafish development, Mol Psychiatr 17, 946-954.

Moro, E., Ozhan-Kizil, G., Mongera, A., Beis, D., Wierzbicki, C., Young, R. M., Bournele, D., Domenichini, A., Valdivia, L. E., Lum, L., Chen, C., Amatruda, J. F., Tiso, N., Weidinger, G., and Argenton, F. (2012) In vivo Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains, Dev Biol 366, 327-340.

Mueller, T. (2012) What is the thalamus in zebrafish?, Front Neurosci-Switz 6.

Norton, W. H. J., and Bally-Cuif, L. (2012) Unravelling the proximate causes of the aggression-boldness behavioural syndrome in zebrafish, Behaviour 149, 1063-1079.

Porazzi, P., Marelli, F., Benato, F., de Filippis, T., Calebiro, D., Argenton, F., Tiso, N., and Persani, L. (2012) Disruptions of Global and Jagged1-Mediated Notch Signaling Affect Thyroid Morphogenesis in the Zebrafish, Endocrinology 153, 5645-5658.

Rath, M., Nitschke, R., Filippi, A., Ronneberger, O., Driever, W. (2012) Generation of high quality multi-view confocal 3D datasets of zebrafish larval brains suitable for analysis using Virtual Brain Explorer (ViBE-Z) software, Nature Protocol Exchange protocols 2408.

Ronneberger, O., Liu, K., Rath, M., Ruess, D., Mueller, T., Skibbe, H., Drayer, B., Schmidt, T., Filippi, A., Nitschke, R., Brox, T., Burkhardt, H., and Driever, W. (2012) ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains (vol 9, pg 735, 2012), Nat Methods 9, 1031-1031.

Roostalu, U., and Strahle, U. (2012) In vivo imaging of molecular interactions at damaged sarcolemma, Dev Cell 22, 515-529.

Santhakumar, K., Judson, E. C., Elks, P. M., McKee, S., Elworthy, S., van Rooijen, E., Walmsley, S. S., Renshaw, S. A., Cross, S. S., and van Eeden, F. J. M. (2012) A Zebrafish Model to Study and Therapeutically Manipulate Hypoxia Signaling in Tumorigenesis, Cancer Research 72, 4017-4027.

Strahle, U., Bally-Cuif, L., Kelsh, R., Beis, D., Mione, M., Panula, P., Figueras, A., Gothilf, Y., Brosamle, C., Geiser, R., and Knedlitschek, G. (2012) EuFishBioMed (COST Action BM0804): A European Network to Promote the Use of Small Fishes in Biomedical Research, Zebrafish 9, 90-93.

Strahle, U., Scholz, S., Geisler, R., Greiner, P., Hollert, H., Rastegar, S., Schumacher, A., Selderslaghs, I., Weiss, C., Witters, H., and Braunbeck, T. (2012) Zebrafish embryos as an alternative to animal experiments-A commentary on the definition of the onset of protected life stages in animal welfare regulations, Reprod Toxicol 33, 128-132.

Sundstrom, E., Komisarczuk, A. Z., Jiang, L., Golovko, A., Navratilova, P., Rinkwitz, S., Becker, T. S., and Andersson, L. (2012) Identification of a melanocyte-specific, microphthalmia-associated transcription factor-dependent regulatory element in the intronic duplication causing hair greying and melanoma in horses, Pigm Cell Melanoma R 25, 28-36.


Boldajipour, B., Doitsidou, M., Tarbashevich, K., Laguri, C., Yu, S. R., Ries, J., Dumstrei, K., Thelen, S., Dorries, J., Messerschmidt, E. M., Thelen, M., Schwille, P., Brand, M., Lortat-Jacob, H., and Raz, E. (2011) Cxcl12 evolution--subfunctionalization of a ligand through altered interaction with the chemokine receptor, Development 138, 2909-2914.

Chapouton, P., Webb, K. J., Stigloher, C., Alunni, A., Adolf, B., Hesl, B., Topp, S., Kremmer, E., and Bally-Cuif, L. (2011) Expression of hairy/enhancer of split genes in neural progenitors and neurogenesis domains of the adult zebrafish brain, J Comp Neurol 519, 1748-1769.

Grandel, H., and Brand, M. (2011) Zebrafish limb development is triggered by a retinoic acid signal during gastrulation, Dev Dyn 240, 1116-1126.

Hans, S., Freudenreich, D., Geffarth, M., Kaslin, J., Machate, A., and Brand, M. (2011) Generation of a non-leaky heat shock-inducible Cre line for conditional Cre/lox strategies in zebrafish, Dev Dyn 240, 108-115.

Kizil, C., and Brand, M. (2011) Cerebroventricular microinjection (CVMI) into adult zebrafish brain is an efficient misexpression method for forebrain ventricular cells, PLoS One 6, e27395.

Laue, K., Pogoda, H. M., Daniel, P. B., van Haeringen, A., Alanay, Y., von Ameln, S., Rachwalski, M., Morgan, T., Gray, M. J., Breuning, M. H., Sawyer, G. M., Sutherland-Smith, A. J., Nikkels, P. G., Kubisch, C., Bloch, W., Wollnik, B., Hammerschmidt, M., and Robertson, S. P. (2011) Craniosynostosis and multiple skeletal anomalies in humans and zebrafish result from a defect in the localized degradation of retinoic acid, Am J Hum Genet 89, 595-606.

Lobbardi, R., Lambert, G., Zhao, J., Geisler, R., Kim, H. R., and Rosa, F. M. (2011) Fine-tuning of Hh signaling by the RNA-binding protein Quaking to control muscle development, Development 138, 1783-1794.

Norton, W. H., Stumpenhorst, K., Faus-Kessler, T., Folchert, A., Rohner, N., Harris, M. P., Callebert, J., and Bally-Cuif, L. (2011) Modulation of Fgfr1a signaling in zebrafish reveals a genetic basis for the aggression-boldness syndrome, J Neurosci 31, 13796-13807.

Rothenaigner, I., Krecsmarik, M., Hayes, J. A., Bahn, B., Lepier, A., Fortin, G., Gotz, M., Jagasia, R., and Bally-Cuif, L. (2011) Clonal analysis by distinct viral vectors identifies bona fide neural stem cells in the adult zebrafish telencephalon and characterizes their division properties and fate, Development 138, 1459-1469.

Webb, K. J., Coolen, M., Gloeckner, C. J., Stigloher, C., Bahn, B., Topp, S., Ueffing, M., and Bally-Cuif, L. (2011) The Enhancer of split transcription factor Her8a is a novel dimerisation partner for Her3 that controls anterior hindbrain neurogenesis in zebrafish, BMC Dev Biol 11, 27.


Marz, M., Schmidt, R., Rastegar, S., and Strahle, U. (2010) Expression of the transcription factor Olig2 in proliferating cells in the adult zebrafish telencephalon, Dev Dyn 239, 3336-3349.